Rust expression browser: an open source database for simultaneous analysis of host and pathogen gene expression profiles with expVIP

Gene expression analysis of plant host-pathogen interactions by SuperSAGE.

The type III restriction endonuclease EcoP15I was used in isolating fragments of 26 bp from defined positions of cDNAs. We call this substantially improved variant to the conventional serial analysis of gene expression (SAGE) procedure "SuperSAGE." By applying SuperSAGE to Magnaporthe grisea (blast)-infected rice leaves, gene expression profiles of both the rice host and blast fungus were simul...

Microarray Analysis of Host-Pathogen Interactions: An Array Expression Database Enabling Cross-Comparison of Pathogenesis

GeneX: An Open Source gene expression database and integrated tool set

Because gene expression profiles are highly sensitive to sample and processing conditions, it is crucial to accurately represent these conditions along with the numeric data in a way that allows the conditions to be part of a query. The GeneX project is intended to provide an Open Source database and integrated tool set that will allow researchers to store and evaluate their gene expression dat...

Renal Gene Expression Database (RGED): a relational database of gene expression profiles in kidney disease

UNLABELLED We present a bioinformatics database named Renal Gene Expression Database (RGED), which contains comprehensive gene expression data sets from renal disease research. The web-based interface of RGED allows users to query the gene expression profiles in various kidney-related samples, including renal cell lines, human kidney tissues and murine model kidneys. Researchers can explore cer...

Recognition events and host-pathogen co-evolution in gene-for-gene resistance to flax rust.

The outcome of infection of individual plants by pathogenic organisms is governed by complex interactions between the host and pathogen. These interactions are the result of long-term co-evolutionary processes involving selection and counterselection between plants and their pathogens. These processes are ongoing, and occur at many spatio-temporal scales, including genes and gene products, cell...